Remedies of the Taxpayer in case the CIR Denies the Protest or Fails… | Decision of the Commissioner on the Protest | Taxpayers Remedies | Tax Remedies | NIRC | TAXATION LAW

Under the National Internal Revenue Code (NIRC) of 1997, as amended by the Tax Reform for Acceleration and Inclusion (TRAIN) Law (Republic Act No. 10963) and the Ease of Paying Taxes Act (Republic Act No. 11976), the taxpayer has specific remedies if the Commissioner of Internal Revenue (CIR) denies the protest or fails to act on the protest.

Here is a detailed explanation of the taxpayer’s remedies under these circumstances:


1. Filing of an Administrative Protest

Upon receiving a formal assessment from the BIR, the taxpayer has the option to dispute it by filing an administrative protest with the CIR. This protest must be in writing and should either be a request for reconsideration or a request for reinvestigation, specifying the legal and factual bases of the protest.

Deadlines for Filing

  • The taxpayer must file the administrative protest within 30 days from the receipt of the formal assessment notice (FAN).
  • If additional supporting documents are necessary for a request for reinvestigation, they must be submitted within 60 days from the filing of the protest.

2. Decision of the CIR on the Protest

Once a protest is filed, the CIR has 180 days from receipt of the protest and any necessary documents to make a decision. The CIR can either grant or deny the protest:

  1. Denial of the Protest by the CIR: If the CIR denies the protest, the taxpayer is entitled to seek judicial remedies.
  2. Inaction by the CIR: If the CIR fails to act within the 180-day period, the protest is considered unresolved, giving the taxpayer additional remedies.

3. Remedies of the Taxpayer in Case the CIR Denies the Protest or Fails to Act on the Protest

If the taxpayer's protest is denied or if the CIR fails to resolve it within the 180-day period, the taxpayer has two primary courses of action:

A. Filing an Appeal with the Court of Tax Appeals (CTA)

The taxpayer may elevate the case to the Court of Tax Appeals (CTA), which has exclusive appellate jurisdiction over decisions by the CIR. The appeal must comply with the following requirements:

  • Timeline for Filing:

    • If the CIR denies the protest, the taxpayer has 30 days from receipt of the denial to file a petition for review with the CTA.
    • If the CIR fails to act on the protest within the 180-day period, the taxpayer can consider this inaction as a “deemed denial” and has 30 days from the end of the 180-day period to file the petition for review.
  • Mandatory Formalities: The taxpayer must follow the procedural requirements set forth by the CTA, including the submission of a verified petition, which should include statements of facts and legal bases for questioning the CIR’s assessment.

  • Grounds for Appeal: The appeal may include factual or legal errors in the CIR’s decision. Common grounds include challenging the accuracy or validity of the assessment, lack of due process, or discrepancies in tax computation.

B. Availment of Judicial Remedies for Refunds or Tax Credits

If the taxpayer believes they are entitled to a tax refund or tax credit due to overpayment or incorrect assessment, they may also file a claim with the CIR. If the CIR denies the claim or fails to act within 180 days, the taxpayer may then elevate the matter to the CTA.

  • Timeline for Refund Claims:

    • The taxpayer has two years from the date of payment or from the occurrence of the tax overpayment to file a refund claim.
    • If the CIR denies the claim or fails to act within 180 days, the taxpayer has 30 days from the date of denial or the end of the 180-day period to file an appeal with the CTA.
  • Documentation Requirements: The taxpayer must present proof of payment, records supporting the claim for overpayment, and substantiation for all deductions and credits claimed.


4. Key Considerations and Requirements in Pursuing Judicial Remedies

  1. Exhaustion of Administrative Remedies: Before going to the CTA, the taxpayer must exhaust all administrative remedies. This includes filing a protest with the CIR and waiting for the 180-day period, unless there is a denial.

  2. Properly Timed Actions: The taxpayer must adhere to the statutory deadlines for each step of the process. Missing these deadlines may lead to the dismissal of the appeal or forfeiture of the right to claim a refund.

  3. Burden of Proof: In tax disputes, the taxpayer generally bears the burden of proving that the CIR’s assessment was incorrect or that a refund is warranted. Proper and complete documentation, adherence to procedural requirements, and solid legal arguments are crucial.

  4. Legal Representation and Expert Assistance: Tax law is complex, and disputes with the BIR can be technical. Taxpayers are advised to consult with tax attorneys or specialists for guidance on procedural and substantive tax law matters to ensure that their rights and claims are properly asserted.

  5. Judicial Review and Resolution: If the CTA rules in favor of the taxpayer, it may reverse or adjust the assessment or award the taxpayer a refund. However, the CIR has the right to appeal the CTA’s decision to the Supreme Court, as do taxpayers if they are dissatisfied with the outcome.

  6. Other Relevant Laws and Regulations: The Ease of Paying Taxes Act (RA 11976) aims to streamline tax processes, but procedural deadlines and evidentiary requirements remain critical for taxpayer remedies.


Summary of Taxpayer Remedies in Case of CIR’s Denial or Inaction

Action by CIR Taxpayer’s Remedy Deadline
Denial of Protest File an appeal with the CTA 30 days from receipt of denial
Inaction (180 days) File an appeal with the CTA (deemed denial) 30 days from end of 180-day period
Denial of Refund Claim File an appeal with the CTA 30 days from denial
Inaction on Refund Claim File an appeal with the CTA 30 days from end of 180-day period
Overpayment Claims File refund claim with CIR; if denied, appeal to CTA 2 years from date of payment

In conclusion, the remedies available to taxpayers under the NIRC, as amended by the TRAIN Law and the Ease of Paying Taxes Act, provide a structured pathway for contesting assessments and claiming refunds. While strict adherence to timelines and procedural rules is required, these remedies uphold taxpayer rights and provide judicial oversight of BIR assessments and decisions.